biospecdb.apps.uploader.io

Functions

read_meta_data(file[, index_column])	Read in bulk upload meta data file of all Observations and parsable model fields.
read_single_row_spectral_data_table(file[, ...])	Read in single row spectral data.
read_spectral_data(file)	General purpose reader to handle multiple file formats returning SpectralData instance.
read_spectral_data_table(file[, index_column])	Read in multiple rows of data returning a pandas.DataFrame.
spectral_data_from_json(file)	Read spectral data of the form {"patient_id": value, "wavelength": [values], "intensity": [values]} and return data SpectralData instance.
spectral_data_to_json(file, data[, ...])	Convert data to json equivalent to {"patient_id": value, "wavelength": [values], "intensity": [values]} Returns json str and/or writes to file.

Classes

FileFormats(value[, names, module, ...])
SpectralData(patient_id, wavelength, intensity)

Exceptions

DataSchemaError