Index

_

__init__() (biospecdb.qc.qcfilter.QcFilter method) (catalog.models.Dataset method) (explorer.models.Query method) (uploader.exporters.CSVExporter method) (uploader.exporters.ExcelExporter method) (uploader.exporters.JSONExporter method) (uploader.exporters.ZipSpectralDataMixin method) (uploader.models.BioSample method) (uploader.models.BioSampleType method) (uploader.models.Instrument method) (uploader.models.Observable method) (uploader.models.Observation method) (uploader.models.Patient method) (uploader.models.QCAnnotation method) (uploader.models.QCAnnotator method) (uploader.models.SpectralData method) (uploader.models.SpectraMeasurementType method) (uploader.models.UploadedFile method) (uploader.models.Visit method) (user.models.Center method) (user.models.User method)

A

acquisition_time (uploader.models.SpectralData attribute) alias (uploader.models.Observable attribute)

annotator (uploader.models.QCAnnotation attribute) app_version (catalog.models.Dataset attribute) atr_crystal (uploader.models.SpectralData attribute)

B

bio_sample (uploader.models.SpectralData attribute) BioSample (class in uploader.models) BioSampleType (class in uploader.models) biospecdb.apps.uploader.io module

biospecdb.apps.uploader.loaddata module biospecdb.apps.uploader.sql module biospecdb.util module

C

category (uploader.models.Observable attribute) Center (class in user.models) center (uploader.models.Instrument attribute) (uploader.models.Observable attribute) (uploader.models.Patient attribute) (uploader.models.UploadedFile attribute) (user.models.User attribute)

centrifuge_rpm (uploader.models.BioSample attribute) centrifuge_time (uploader.models.BioSample attribute) cid (uploader.models.Instrument attribute) country (user.models.Center attribute) CSVExporter (class in uploader.exporters)

D

data (uploader.models.SpectralData attribute) data_sha256 (catalog.models.Dataset attribute) Dataset (class in catalog.models) date (uploader.models.SpectralData attribute) date_joined (user.models.User attribute)

days_observed (uploader.models.Observation attribute) (uploader.models.Visit attribute) default (uploader.models.QCAnnotator attribute) description (catalog.models.Dataset attribute) (uploader.models.Observable attribute) (uploader.models.QCAnnotator attribute)

E

email (user.models.User attribute)

ExcelExporter (class in uploader.exporters)

F

file (catalog.models.Dataset attribute) first_name (user.models.User attribute)

freezing_temp (uploader.models.BioSample attribute) freezing_time (uploader.models.BioSample attribute) fully_qualified_class_name (uploader.models.QCAnnotator attribute)

G

get_line_chart() (in module uploader.charts)

get_pie_chart() (in module uploader.charts)

I

id (catalog.models.Dataset attribute) (uploader.models.Instrument attribute) (uploader.models.SpectralData attribute) (user.models.Center attribute) Instrument (class in uploader.models)

instrument (uploader.models.SpectralData attribute) is_active (user.models.User attribute) is_catalogviewer (user.models.User attribute) is_sqluser_change (user.models.User attribute) is_sqluser_view (user.models.User attribute) is_staff (user.models.User attribute)

J

JSONExporter (class in uploader.exporters)

L

laser_manufacturer (uploader.models.Instrument attribute) laser_model (uploader.models.Instrument attribute)

laser_serial_number (uploader.models.Instrument attribute) last_name (user.models.User attribute)

M

manufacturer (uploader.models.Instrument attribute) measurement_id (uploader.models.SpectralData attribute) measurement_type (uploader.models.SpectralData attribute) meta_data_file (uploader.models.UploadedFile attribute) model (uploader.models.Instrument attribute)

module biospecdb.apps.uploader.io biospecdb.apps.uploader.loaddata biospecdb.apps.uploader.sql biospecdb.util

N

n_coadditions (uploader.models.SpectralData attribute) n_rows (catalog.models.Dataset attribute) name (catalog.models.Dataset attribute) (uploader.models.BioSampleType attribute) (uploader.models.Observable attribute) (uploader.models.QCAnnotator attribute) (uploader.models.SpectraMeasurementType attribute) (user.models.Center attribute)

O

Observable (class in uploader.models) observable (uploader.models.Observation attribute)

observable_value (uploader.models.Observation attribute) Observation (class in uploader.models)

P

Patient (class in uploader.models) patient (uploader.models.Visit attribute) patient_cid (uploader.models.Patient attribute)

patient_id (uploader.models.Patient attribute) power (uploader.models.SpectralData attribute) pressure (uploader.models.SpectralData attribute) previous_visit (uploader.models.Visit attribute)

Q

QCAnnotation (class in uploader.models) QCAnnotator (class in uploader.models)

QcFilter (class in biospecdb.qc.qcfilter) query (catalog.models.Dataset attribute) Query (class in explorer.models)

R

resolution (uploader.models.SpectralData attribute)

S

sample_cid (uploader.models.BioSample attribute) sample_extraction (uploader.models.BioSample attribute) sample_extraction_tube (uploader.models.BioSample attribute) sample_processing (uploader.models.BioSample attribute) sample_study_id (uploader.models.BioSample attribute) sample_study_name (uploader.models.BioSample attribute) sample_type (uploader.models.BioSample attribute) serial_number (uploader.models.Instrument attribute) sers_description (uploader.models.SpectralData attribute) sers_particle_concentration (uploader.models.SpectralData attribute) sers_particle_material (uploader.models.SpectralData attribute)

sers_particle_size (uploader.models.SpectralData attribute) sha256 (catalog.models.Dataset attribute) spectral_data (uploader.models.QCAnnotation attribute) spectral_data_file (uploader.models.UploadedFile attribute) spectral_data_filenames (catalog.models.Dataset attribute) SpectralData (class in uploader.models) SpectraMeasurementType (class in uploader.models) spectrometer_manufacturer (uploader.models.Instrument attribute) spectrometer_model (uploader.models.Instrument attribute) spectrometer_serial_number (uploader.models.Instrument attribute) sql (catalog.models.Dataset attribute)

T

thawing_temp (uploader.models.BioSample attribute)

thawing_time (uploader.models.BioSample attribute)

U

UploadedFile (class in uploader.models)

User (class in user.models) username (user.models.User attribute)

V

validator (uploader.models.Observable attribute) value (uploader.models.QCAnnotation attribute) value_choices (uploader.models.Observable attribute) value_class (uploader.models.Observable attribute)

value_type (uploader.models.QCAnnotator attribute) version (catalog.models.Dataset attribute) Visit (class in uploader.models) visit (uploader.models.BioSample attribute) (uploader.models.Observation attribute)

Z

ZipSpectralDataMixin (class in uploader.exporters)